downloading a set of sequences from Genbank using the species names
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5.0 years ago
ieie ▴ 10

Hello all,

i am trying to get a set of sequences only having the species names to use. I would like to knoe if this can be done automatically with R or Python or in another way. I have tried phylotaR, biomartr and reentrez but I could not. is it an efficient way to do it?

Thanks a lot for your help

sequence gene genbank • 832 views
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You can use EntrezDirect. That would be pretty efficient.

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Which sequences? - cDNA or protein?; or genome sequence?

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plant species and I need to dwoanload the complete ITS

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