downloading a set of sequences from Genbank using the species names
0
0
Entering edit mode
5.0 years ago
ieie ▴ 10

Hello all,

i am trying to get a set of sequences only having the species names to use. I would like to knoe if this can be done automatically with R or Python or in another way. I have tried phylotaR, biomartr and reentrez but I could not. is it an efficient way to do it?

Thanks a lot for your help

sequence gene genbank • 834 views
ADD COMMENT
0
Entering edit mode

You can use EntrezDirect. That would be pretty efficient.

ADD REPLY
0
Entering edit mode

Which sequences? - cDNA or protein?; or genome sequence?

ADD REPLY
0
Entering edit mode

plant species and I need to dwoanload the complete ITS

ADD REPLY

Login before adding your answer.

Traffic: 1036 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6