R tools to display SNVs and CNVs at the same plot?
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5.0 years ago
zhao03 ▴ 70

Is there any R tools can display the SNVs and CNVs at the same plot? I want to show the situation that like TP53 occurred mutation and CNV amplification at the same time figure 1 form the paper PMID :31063779 DOI: 10.1053/j.gastro.2019.05.001

R SNP genome • 1.3k views
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5.0 years ago
JY Nam ▴ 30

Use oncoprint (https://jokergoo.github.io/ComplexHeatmap-reference/book/oncoprint.html)

It is exactly generate a plot you want.

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5.0 years ago
zhao03 ▴ 70

it is very useful , thank you very much!

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