Well studied gene networks/pathways in rice

Question

[zhang.jianhai]

Hello,

I need well-studied rice networks/pathways to test networks constructed using my own method, i.e. use the well-studies networks to do enrichment on my own networks. Except for KEGG, Mapman, what other resources are recommended?

Regards.

[andres.firrincieli]

Hi Zhang,

what are you looking for is not clear at all. What kind of data did you use to build your network? How did you built your network?

[zhang.jianhai]

Hi Andres,

I used rice RNA-seq data to build my own networks, and want to know how these networks are related to known/gold standard rice networks. Therefore, any known/gold standard rice networks/pathways are interesting to me such as the Flavonoid pathway, the more the better.

[ashish]

Its actually not clear what kind of networks you are talking about. If its co-expression networks than this is a good resource where they have used RNA-seq data. There is another good resource but it is based on microarray data.

[zhang.jianhai]

I am talking co-expression networks. Yes the two are good resources. Thank you!