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5.1 years ago
kabir.deb
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90
I'm trying to run macse.jar file in my sequence to replace internal stop codons from multifasta sequence using below command
for i in *.fna
do
echo "${i}"
java -jar macse.jar -prog exportAlignment -align "${i}" -ambi_OFF true -canonize_ON true -codonForFinalStop --- -codonForInternalFS NNN -codonForInternalStop NNN -out_AA "${i}"aaR.faa -out_AA_consensus "${i}"aaCR.faa -out_NT "${i}"nuR.fasta -out_NT_consensus "${i}"nuCR.fasta -out_stat_per_seq "${i}"statseq.csv -out_stat_per_site "${i}"statsite.csv
done;
But after running it is showing
String index out of range: 2823
KIndly help to get rid of this problem.
Thanks
looks like a programming error or a poor error message. Isn't there a full stack trace ?