How to apply SCENIC to other species for gene network regulatory anlysis?
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5.0 years ago
hsu ▴ 40

I want to analyze scRNA-seq data of another species for gene network regulatory by applying SCENIC. However, SCENIC is currently only used for human, mouse, and fruit fly. The official workflow suggests "To apply SCENIC to other species, it would require manual adjustments on the second step (e.g. new RcisTarget databases or using a diferent motif-enrichment-analysis tool)."

But I am still confused and have no idea about how to do it. Does anyone have the experience to apply SCENIC to other species? Thanks for your help!

scRNA-seq SCENIC GNR • 937 views
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