How to build my resource-bundle for variant recalibrator?

Question

[Sakhaa]

Hello everyone,

I have a specific data set and I want to use it as resource bundle to train my model. Could anyone guides me how can I prepare my data to fitted in variant recalibrator tool from gatk?

Thank you very much!

Answer 1

[Begonia_pavonina]

I have the same problem.

A link for making custom training database was available here, but it seems broken now: https://evodify.com/gatk-in-non-model-organism/

I will try to get the link back and post it here.