Spades output help
1
0
Entering edit mode
5.0 years ago
niyomiw88 • 0

Every time I try to run this on command line it gives me an error saying that output directory is not specified. What else should i include to specify the output directory?

spades.py -k 73,75,77 --careful --only-assembler -s <Pediculus-humanus-USDA_CONTIGS_PhumU2.fa> -o test1
assembly genome • 1.2k views
ADD COMMENT
4
Entering edit mode
5.0 years ago
JC 13k

If that is your exact command, the "<" and ">" means something different to the shell (I/O redirection), I think you need:

spades.py -k 73,75,77 --careful --only-assembler -s pediculus-humanus-usda_contigs_phumu2.fa -o test1
ADD COMMENT
0
Entering edit mode

Thank you so much! It actually worked :D

ADD REPLY

Login before adding your answer.

Traffic: 1348 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6