Error running SViCT

Question

[arshiya.g02]

Hi,

Am trying to run SViCT for structural variant calling for ctDNA samples. I used GATK to convert Fastq files to BAM and sorted. Command :

./svict -i ../CRC1.sorted.bam -r ../FastQC/hg38.fa -o CRC1 Assembling contigs... Segmentation fault (core dumped)

Now, it just gives me that and I looked online but I couldn't find any help. Do you think it's a matter of size of the file? What should I do in such case?

Thank you in advance..

[Kevin Blighe]

Please post on the issues page: https://github.com/vpc-ccg/svict/issues

I came across this error, too. Increasing the memory did not make the problem go away.

[arshiya.g02]

Its already reported in the repository but no response from their side