Entering edit mode
5.0 years ago
hsu
▴
40
I have anlyzed co-expressed genes of TFs of yeast and I want to do TF motif enrichment analysis just based on these genes. I have no sequences as input.
Besides, I want to remove some false positive co-expressed genes with TF. Do you have any suggestions? Thank you very much !
I originally wanted to use the Pacage---Ristarget, but this method dose not support analysis for yeast.
For your first question, do you mean you want to find the TF which regulates your selected genes? You can use the promoter region as the input sequence
I don't know what do you refer to on false-positive co-expressed genes