How to map a set of genes on a circular representation of DNA ?

Question

[CriticalPeriod]

Hello everyone, I was wondering if it is possible to map all the genes that I found to be differentially expressed on a circular representation of the genome ? I've seen this kind of representation for atac or chip seq but I don't manage to find how to make one ?

It would be to visualize if the genes I found differentially expressed are located prefentially on some regions close in contact. Thank you very much, David

[CriticalPeriod]

Thanks ! It looks like possible with this, even though quite complicated but I'll look into it. Just to precise, I do not work with circular so in fact any other way of mapping (such as little chromosome schemes that I've seen recently) is appreciated. Thank you !

[CriticalPeriod]

Karyoplot R worked just fine, even though less clear than Circos that I didn't manage to install :'( Thank you both

Answer 1

[vin.darb]

Maybe Circos ? http://circos.ca

I have never used it but it seems that we can do a lot of things

Answer 2

[palabari]

you could also try: https://bioconductor.org/packages/release/bioc/vignettes/karyoploteR/inst/doc/karyoploteR.html