Question

Consistency of LD in the two populations

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5.0 years ago

adele ▴ 80

I have two population. I used PLINK for calculating LD. The consistency of LD in the two populations is measured by the correlation of rLD of adjacent marker pairs on each autosome between the two populations. How do you calculate it in R? Can everybody explain more?

LD consistency • 885 views

ADD COMMENT • link updated 5.0 years ago by Yean ▴ 140 • written 5.0 years ago by adele ▴ 80

score 0 · Answer 1 · 2019-12-31

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5.0 years ago

Yean ▴ 140

what about genetic package ?

ADD COMMENT • link 5.0 years ago by Yean ▴ 140