About the method for removing the SNP markers with more than 10% of missing data?

Question

[r00628112]

Hi~ everyone.

For the QTL analysis, I conducted the GBS getting SNP markers for the establishment of the genetic map. However, there are some SNP markers with too much missing data, I would like to discard these SNPs.

Is there any tool that can discard the SNP markers with more than 10% of missing data from the VCF file?

Thank you so much