Error in MEGAHIT

Question

[nisrinalulu]

Dear everyone!

I have problem to run MEGAHIT in .sh script to assembly my sequence. I put command like this

chmod +x assembly.sh
(base) [husna@hn001 lulu]$ cd assembly.sh
(base) [husna@hn001 assembly.sh]$ megahit -1 HA_1.fq.gz -2 HA_2.fq.gz -o asm

and the answer for my command is like this:

2020-01-15 13:03:03 - MEGAHIT v1.2.9
2020-01-15 13:03:03 - Using megahit_core with POPCNT and BMI2 support
2020-01-15 13:03:03 - Convert reads to binary library

What does it means? and how to solved that problem?

Thank you

[Kevin Blighe]

There is no error message.

Why are you running this line?

cd assembly.sh

You cannot change directory to a script file