Recs for what to use for analyzing IBS sharing (from phased, imputed VCFs)?
0
0
Entering edit mode
4.8 years ago
devenvyas ▴ 760

I have imputed GZ.VCFs from Beagle 4.0 based on some ancient DNA VCFs (24 individuals). Beagle phased the genotypes in their output.

I am looking to do some IBD tract sharing analyses between 24 samples. Does anyone have recommendations on what software package to use for the imputation?

IBD • 648 views
ADD COMMENT

Login before adding your answer.

Traffic: 1942 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6