Entering edit mode
4.9 years ago
kristina.mahan
▴
170
I just got back pacbio sequel data and I received:
-fasta.gz
-fastq.gz
-2 subreads.bam
-2 subreads.bam.pbi
-2 subreads.bam.xml
Why did they give me .bam files and why are there 2? If I want to use CANU for de novo assembly do I use the .bam files?
There is two because I wanted sequencing on 2 PacBio Sequel SMRT cells. Do I use the .bam or the .fastq for genome assembly?