PacBio Sequel data
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4.9 years ago

I just got back pacbio sequel data and I received:

-fasta.gz
-fastq.gz
-2 subreads.bam
-2 subreads.bam.pbi
-2 subreads.bam.xml

Why did they give me .bam files and why are there 2? If I want to use CANU for de novo assembly do I use the .bam files?

subreads.bam pacbio sequel de novo genome assembly • 1.1k views
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There is two because I wanted sequencing on 2 PacBio Sequel SMRT cells. Do I use the .bam or the .fastq for genome assembly?

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