Question

caluculate q30 from bam file with samtools

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4.8 years ago

genya35 ▴ 50

Hello,

Is it possible to calculate Q30 from a bam with Samtools? I've looked at Samtools stats and didn't see that option.

Thanks

next-gen • 2.1k views

ADD COMMENT • link 4.8 years ago by genya35 ▴ 50

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Q30 for entire dataset or average per read?

ADD REPLY • link 4.8 years ago by GenoMax 147k

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One value for the entire bam file please.

ADD REPLY • link 4.8 years ago by genya35 ▴ 50

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Please use ADD REPLY and leave the answer field for answers. That keeps the thread logically organized.

ADD REPLY • link 4.8 years ago by ATpoint 85k

score 0 · Answer 1 · 2020-01-24

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4.8 years ago

GenoMax 147k

ADD COMMENT • link 4.8 years ago by GenoMax 147k