How to get correlation coefficient value between the genes in the WGCNA module network?
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5.8 years ago
Vasu ▴ 790

Hello,

With my dataset 88 tumor and 70 normal samples with 30k protein coding genes and lncRNAs. I have used WGCNA for co-expression network construction.

With WGCNA, I got 30 modules. It looks like below:

Modules

I'm interested in brown module and how I can get correlation coefficient value of all the genes and lncRNAs present in that module?

Any help is appreciated.

RNA-Seq wgcna coexpressionnetwork R lncrna • 2.2k views
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can anyone tell me how I can get the correlation coefficient and corresponding pvalues for each gene pair (lncRNA and mRNA) with WGCNA?

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have you found the solution?

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