Entering edit mode
6.7 years ago
John
▴
270
Hi,
I used DDRTree to reduce dimension( in Monocle).
HSMM <- reduceDimension(HSMM, max_components = 2, norm_method = 'log',
reduction_method = 'DDRTree',
residualModelFormulaStr = NULL,
verbose = T)
I get the following error while clustering cells
> HSMM <- clusterCells(HSMM, num_clusters = 4)
Error in clusterCells(HSMM, num_clusters = 4) :
reduced dimension space doesn't match the dimension of the CellDataSet object
Can anyone please help in this, I am new to R
What is your data looking like? (if you still have the problem?)