CNV analysis from WGBS data

Question

[Deepak Tanwar]

Hello!

Which tools can I use for CNV analysis from WGBS data?

Can I use tools like CNVkit or CNVnator, followed by CNVRanger?

Answer 1

[ATpoint]

WGBS is basically normal WGS, but with generally lower quality due to the bisulfite conversion. You can therefore any of the numerous CNV tools available.