Problem on mapping SNP ID
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5.0 years ago
Will ▴ 20

I have a binary plink file when in the bim fil I have for example (.bim):

    imm_1_898835    0   898835  0   A
    vh_1_1221519    0   1221519 A   G
1kg_1_22548879  0   22548879    T   C

I want to map the id of the SNPs to the rs id. There reference genome should be the hg18 and SNP genotyping was performed using Illumina Immunochip, the Immunochip is an Illumina Infinium iSelect HD Custom Genotyping array.

How can I do that ?

SNP Illumina • 862 views
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This is a Question-type post as it has a finite number of "correct" answers. It is not a Forum discussion (which would have subjective responses and not objectively correct answers). I've made the necessary change for now but please be more careful in the future.

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