Question

how to plot the genotype of every SNP

0

Entering edit mode

4.8 years ago

Victor ▴ 10

Hi,

According to the post of Kevin Blighe, A: B allele frequency SNP array

I am wondering how to plot the genotype of every SNP for a single sample. Are there any R-packages can be used?

SNP R genotype plot allele • 1.0k views

ADD COMMENT • link updated 4.8 years ago by AsoInfo ▴ 300 • written 4.8 years ago by Victor ▴ 10

score 1 · Answer 1 · 2020-02-18

1

Entering edit mode

4.8 years ago

AsoInfo ▴ 300

It depends on your input file format. Haploview can be used for showing the genotypes of SNP's along with the LD plot.

ADD COMMENT • link 4.8 years ago by AsoInfo ▴ 300