bioconductor expressionset, summarizedexperiment

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4.8 years ago

WUSCHEL ▴ 810

Could you help me to find Intuitive Introductory resources to bioconductor expressionset and summarizedexperiment and learn how to work with SE data (At the end wanna handle edgeR, DEP, limma, and DESEQ2 packages by myself)

Any gentle introduction? It seems difficult to get familiar with these packages by having basic basic R programming.

Couldn’t afford any workshops or programming expert nearby. By googling don’t know from where to start!

RNA-Seq R genome bioconductor • 1.7k views

ADD COMMENT • link 4.8 years ago by WUSCHEL ▴ 810

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What exactly is unclear after reading the manual:

https://bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html

ADD REPLY • link 4.8 years ago by ATpoint 85k

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Thank you, Just want to learn how to export data to csv files and working with dplyr.

ADD REPLY • link 4.7 years ago by WUSCHEL ▴ 810

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What has dplyr to do with your toplevel question?

ADD REPLY • link 4.7 years ago by ATpoint 85k

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Not for the top-level, Just after normalizing & Imputation steps!

ADD REPLY • link 4.7 years ago by WUSCHEL ▴ 810

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