Integrating WGS and RNA-seq data

Question

[halo22]

Are there any studies or reference papers that has done a integration of WGS and RNA-seq data? I am fairly new to RNA-seq and trying to understand how to correlate WGS and RNA-seq results.

Answer 1

[natasha.sernova]

A very recent gene-fusion discovery paper:

INTEGRATE: Gene fusion discovery using whole genome and transcriptome data

http://genome.cshlp.org/content/early/2015/11/10/gr.186114.114

And another one:

QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization

http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-2356-9

[biosys]

I was wondering if there are new updates regarding WGS and RNA-seq Data integration (tools and best pipelines etc).

Answer 2

[biosys]

I was wondering if there are new updates regarding WGS and RNA-seq Data integration (tools and best pipelines etc).