lineage analysis on microbial samples (tuberculosis)

Question

[hafiz.talhamalik]

I want to perform lineage analysis on my microbial samples. I came across one platform TGS-TB which do this for tuberculosis, but it has the limitation of data uploading. I want to know is there any tool, package which help me perform this type of analysis for my samples ??

[shenwei356]

Try QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data , https://doi.org/10.1186/s12864-020-6486-3 , https://github.com/AbeelLab/quanttb/

[Arup Ghosh]

TBProfiler can predict lineage information from WGS data.