Entering edit mode
4.8 years ago
Giovy
•
0
Hello,
I have this error when I try to run the assembly:
Error, no Inchworm output is detected at: /nfs/student/giovy92/RNA-seq/practice/trinity/trinity_out_dir/inchworm.K25.L25.DS.fa at //nfs/student/giovy92/RNA-seq/trinityrnaseq_r20140717/Trinity line 1279.
What does it mean?
The command that I have is
Trinity --seqType fq --JM 100G --CPU 8 --single ./combined.fastq.gz
Thank you!!!
Which version of Trinity? Are there other error messages? Did you try the suggestions found at the many threads you find when searching for
Error, no Inchworm output is detected
?