zUMIs yaml configuration file for SPLIT-seq data help

Question

[castravete2712]

Hello,

I wanted to try zUMIs in order to analyze some split-seq data. I have the R1 and the R2 files and the barcodes, the star index is created and the gtf file is also loaded ... I have some trouble configuring the YAML file for zUMIs, or more precisely, I have trouble being sure I'm configuring it right. When I launch the pipeline, even with reduced data files, it just runs ... forever ... never ending, never showing anything, not even an error message or something.

Does someone have a YAML file example for zUMIs for SPLIT-seq or can help me out?

Answer 1

[castravete2712]

Found some answers here, still searching: https://github.com/sdparekh/zUMIs/issues/170