Entering edit mode
4.7 years ago
ashaneev07
▴
40
Hii.... I've followed the installation instruction for installing Blat(for PASA) from https://bioinformaticsonline.com/pages/view/37677/installing-blat-on-linux but, after the make command i have got the following errors. I was searched for a solution but, nothing is satisfactory. Can anyone please help me out of this? Thank you in advance..
make[1]: Leaving directory '/home/Documents/EZ/EVM/PASA/blatSrc/lib'
cd jkOwnLib && make
make[1]: Entering directory '/home/Documents/EZ/EVM/PASA/blatSrc/jkOwnLib'
ar rcus ../lib//jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[1]: Leaving directory '/home/Documents/EZ/EVM/PASA/blatSrc/jkOwnLib'
cd blat && make
make[1]: Entering directory '/home/Documents/EZ/EVM/PASA/blatSrc/blat'
make[1]: *** No rule to make target '../lib//jkweb.a', needed by 'blat'. Stop.
make[1]: Leaving directory '/home/Documents/EZ/EVM/PASA/blatSrc/blat'
makefile:2: recipe for target 'all' failed
make: *** [all] Error 2
If you are academic user you can download pre-compiled
blat
from this link (linux version linked macOS available). Remember to add execute permissions afterwards:chmod +x ./blat
.Did you follow the install instructions on that page? What OS are you trying to install this on?
Thanks for ur replay.I've followed the installation instructions from https://bioinformaticsonline.com/pages/view/37677/installing-blat-on-linux.My OS is Ubuntu and version is 18.o4