Download all isoforms

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4.8 years ago

BDK_compbio ▴ 140

I want to collect all isoforms of all genes (Fasta/Fastq file of nucleotide and protein sequences) of Arabidopsis. I am wondering if there is a straightforward way to download the file from any database.

isoform sequence • 1.1k views

ADD COMMENT • link 4.8 years ago by BDK_compbio ▴ 140

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What have you tried?

ADD REPLY • link 4.8 years ago by Ram 44k

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I downloaded the pep.fasta and cdna.fasta from here. For some other organisms, I am getting sequences from Uniport->Components->Downloads->FASTA format(canonical and isoform). Am I doing it right?

ADD REPLY • link 4.8 years ago by BDK_compbio ▴ 140

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How about getting them from NCBI?

Transcripts
Proteins

ADD REPLY • link 4.8 years ago by GenoMax 148k

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Thanks !! I tried to download from TAIR and Uniport database (as replied to an earlier comment). I hope I am on right track.

ADD REPLY • link 4.8 years ago by BDK_compbio ▴ 140

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