In blasp their is %identity? how to find similarity percentage in blastP ??

Question

[gangadharivinaykumar]

In blasp their is %identity? how to find similarity percentage in blastP ??

[Sej Modha]

Hello gangadharivinaykumar,

You've not phrased the question properly. Please write a more meaningful question or this post will be closed. Remove additional ?symbols as that do not add anything to the question.

[cschu181]

This would be in the ppos (percentage positive matches) field (raw number of positive scoring matches, i.e. "protein similarity" is in positives.)

[dandanli0365]

I also want to find '%identity'

[cschu181]

That would be pident.

Answer 1

[ganchen0430]

I didn't find ppos directly in the report. I click the sequence alignments that I am interested in, and click "alignment" column, and find the positivities, as well as identities.