from blastp uniprot to amino acid sequences fasta

Question

[dimitrischat]

Hello,

I did a blastp search on longest ORFS using a uniprot database. Now i got an excel file with Q9LIK7 , Q9FQ03 etc protein ids. But i would like to get on all of them the amino acid sequence in fasta format. I can get for one of them each time, but doing so, one at a time is too much time. Is there any easier way?

[GenoMax]

You can use UniProt API to download the sequences. Examples are shown here.

You could also download the fasta formatted UniProt data from their ftp site. Then use a program like faSomeRecords from Jim Kent's UCSC utils to extract sequences you need.