Forum:Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19

Question

[dulankak]

This is a list of Virus Genome Length and GC Content of Severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) causing COVID-19, sequences. Hope this will be useful to someone, like looking for Mutations and Different Strains of the SARS-COV-2 Coronavirus.

MS Excel Format

ODS spreadsheet-ODF Format

This list is in Excel format(XLSX) and open document formats.

Source: NCBI https://www.ncbi.nlm.nih.gov/genbank/sars-cov-2-seqs/

[ATpoint]

Suggestion for improvement: You better share code for this instead of files. No offense but I would 1) never download random files from Google Drive (could be any malware) and 2) never trust data for which I do not know how they were produced.

[GenoMax]

Post the data you want to share on GitHub or Pastebin, if you can't host it elsewhere.

[dulankak]

thank you. I will ASAP

Answer 1

[dulankak]

GitHub repository- SARS-COV-2-Genome-Length Please find the code and the data in this repository. code written in python. the results were copied to a spreadsheet (excel, open office) which I shared here.

Answer 2

[dulankak]

https://github.com/dulankak/SARS-COV-2-Genome-Length/tree/rel16042020 pls find the second release of the Data in spread sheets and the sample FASTA files here

Answer 3

[Ibrahim Tanyalcin]

Check the fourth panel, in the below link, I think it makes easier to see the the nucleotide/amino acid sequence and frames they are encoded in.

https://deogen2.mutaframe.com/tools/covid19

Answer 4

[dulankak]

https://github.com/dulankak/SARS-COV-2-Genome-Length/tree/rel10052020 pls find the third release of the Data in spread sheets and the sample FASTA files here

[venu]

Hi Dulankak,

I'd suggest you add updates within your original thread instead of posting as answer each time when there is a new release.