bedGraphToBigWig file converter

0

Entering edit mode

4.7 years ago

iridha • 0

Hello All,

I have MedIpP-seq replicates of same sample. I need to use plotProfile from deeptools to compare them together. for that I need to transform the bdg file generated from MACS2 to a bigwig file using bedGraphToBigWig. the bigwigs files are the input arguments for plotProfile. I do the coding Unix shell. I not able to run the bedGraphToBigWig.Would it be possibly to please give me the steps to run it in the shell?

Thanks much

bedGraphToBigWig macs2 sequence ChIP-Seq • 2.6k views

ADD COMMENT • link updated 4.6 years ago by Biostar 20 • written 4.7 years ago by iridha • 0

0

Entering edit mode

This GitHub post might be helpful for you. https://github.com/taoliu/MACS/wiki/Build-Signal-Track

ADD REPLY • link 4.7 years ago by Prakash ★ 2.2k

0

Entering edit mode

Cross-posted on the bioinfo stackexchange: https://bioinformatics.stackexchange.com/questions/12836/bedgraphtobigwig-file-conversion

ADD REPLY • link 4.7 years ago by Devon Ryan 105k

Login before adding your answer.