How to find mirna target genes?

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4.7 years ago

top5 ▴ 10

Hello, I have DE miRNAs and i am trying to find target genes and i couldn't find a R package by using reference genome the most of the packages take species from tools that is already online. Could you please help me about it?

gene RNA-Seq next-gen R • 1.1k views

ADD COMMENT • link 4.6 years ago by top5 ▴ 10

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You can try miRanda as it requires only the RNA sequences and a genome fasta file.

http://cbio.mskcc.org/microrna_data/manual.html

ADD REPLY • link 4.7 years ago by ATpoint 85k

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i think it is not working or i could not find the way , actually i just want to find prediction. i would be appreciate if you could help me about it...

ADD REPLY • link 4.6 years ago by top5 ▴ 10

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There is a version at conda you can use I guess. https://anaconda.org/bioconda/miranda

ADD REPLY • link 4.7 years ago by ATpoint 85k

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Thank you so much, i will definitely try it.

ADD REPLY • link 4.7 years ago by top5 ▴ 10

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