Imputing missing genetic map distances from a bim file

Question

[devenvyas]

I have a Plink dataset with 7.1 millions biallelic SNPs (which are in 1000G phase 3). I was able to recover genetic map distances for 2.5 million, but not for the rest.

I was wondering, is there a way I can get Plink or any other piece of software to impute the missing map distances?

Answer 1

[shenzhongjun]

I hope this answer by chrchang523 is useful to you Calculating genetic distance from VCF to MAP format