Entering edit mode
4.6 years ago
biohacker_tobe
▴
80
I have two seperate dataframes, from one of these I have already created a heatmap from the first dataframe, however I want to add a sidebar that indicates the type of family that a gene is actually associated to it.
Dataframe 1
BGC1 BGC2 Distance
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BGC31 BGC34 0.6
BGC34 BGC45 0.7
BGC34 BGC53 0.2
BGC53 BGC31 0.8
Dataframe2
BGC1 Association
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BGC31 Skin Cancer
BGC34 Skin Cancer
BGC34 Lung Cancer
BGC53 Liver Cancer
I'm looking to create something like this where each color represents a type of gene cluster associated to a specific gene class:
p3 <- heatmap.3(comat, scale = "none", trace = "none", col = color, main="GCF Co-Occurrence Map"
,lhei=c(0.5,1), keysize=0.5, cexRow = 0.60, cexCol = 0.65)
There is a recent awesome package for this by Guangchuang Yu to do this. Check here.
hey! this unfortunately does not allow me to map back my annotated gene clusters