genome alignment for more than 6000 sequences

Question

[ruchi19sinha]

Hello,

I am working with more than 6000 genome sequence of average size 29Kb. I want to perform multiple sequence alignment taking all genome sequences.

Kindly suggest fast and efficient tools to perform genome multiple sequence alignment.

Answer 1

[lakhujanivijay]

Look at these posts

Multiple whole genome alignment tools ?

Help With Multiple Whole Genome Alignment. Aligning Over 400 Whole Genomes