BETA for different conditions

Question

[kindisha_blue4]

HI! I have ChIP-seq data from two different conditions (stressed and non-stressed cells with overexpression of a TF), and RNA-seq data from those conditions and in two type of cells: WT and overexpressed. Is it possible to use BETA software to integrate these data and compare both conditions? Thank you so much for your help! This is the best group ever!

[ATpoint]

Probably yes. For a more elaborate answer we need details which you currently do not provide.