RNA-Seq data from GEO http vs SRA

Question

[jabbari.parnian]

Hi all

I want to get the raw RNA-seq fastq files from GEO. I want to know whether the data I get from the (http) from the supplementary files is different from the data we get from SRA in the relations. Also, is there a way to get all the SRX files at once with wget?

[GenoMax]

Also, is there a way to get all the SRX files at once with wget

Not in the sense you are thinking i.e. one wget line. But it is possible with the tool @lieven mentioned to generate all of the necessary command lines at once.

Answer 1

[lieven.sterck]

I found this 'tool' very useful when querying and downloading data from SRA /ENA / ....

https://sra-explorer.info/