Can you use salmon bootstraps to increase sample size for machine learning
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4.6 years ago
yryan ▴ 10

Hi folks,

I've got some time course matched RNA seq experiments with n=6 for controls and exposures. I'm trying to do some machine learning classification with these. I'm wondering if using the bootstraps generated by salmon is a valid way of increasing my sample size or is this not really suitable?

RNA-Seq salmon machine learning • 844 views
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4.6 years ago
ATpoint 85k

No, it is not. These are uncertainty estimates, not replicates.

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Okay, thanks! (making up characters to comment)

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