how to remove bedpe deplication

Question

[liulinli17m]

hi I want to remove duplication in bedpe the format like this : chr start end chr start end how to remove overlap in this bedpe file? thanks

Answer 1

[ATpoint]

Exact duplications?

sort -k1,1 -k2,2n -k3,3n -k4,4 -k5,5n -k6,6n -u