Question

bulkdownload fastq files from ENA

0

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4.6 years ago

amitpande74 ▴ 20

Hi,

I want to download fastq files from this study. Tried pysradb, pysradb download -p SRP165962 --out-dirbut it downloads all empty folders anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR806/SRR8068516/SRR8068516.sra

Any better way to download the data?

Kindly suggest

fastq ENA • 1.7k views

ADD COMMENT • link updated 20 months ago by Ram 44k • written 4.6 years ago by amitpande74 ▴ 20

score 1 · Answer 1 · 2020-05-01

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4.6 years ago

GenoMax 147k

Use sra-explorer: sra-explorer : find SRA and FastQ download URLs in a couple of clicks You can get bulk download command lines.

ADD COMMENT • link 4.6 years ago by GenoMax 147k

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If I want to directly download this in an external hard drive ?

ADD REPLY • link 4.6 years ago by amitpande74 ▴ 20

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Set the destination to the desired location.

ADD REPLY • link 4.6 years ago by GenoMax 147k