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Gene_MMP8
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I have a list of oncogenic mutations from the OncoKB database. The data looks someting like this
Gene Alteration Oncogenicity
CBL P417A likely oncogenic
CBL N454D likely neutral
I want to convert the above data set into the following format
Gene Alteration Location Pathogenicity
CBL P417A chrX:Y-Z likely oncogenic
CBL N454D chrA:B-C likely neutral
Where X,A are chromosome numbers and B,C,Y,Z are genomic positions. Is there a straightforward way to do this? I have 1000s of such mutations.
see Amino Acid Change To Genomic Location ; Amino acid location to nucleotide location conversion tools ; Convert Amino Acid Change To Chromosomal Snp Coordinate ; ...