Mapping an unique KEGG pathway

Question

[zion22]

Hi, sorry for my ignorance. I would like to know how I could check if all the genes of an unique KEGG PATHWAY (e.g. GO:0009718) are present in my genome?

and if possible, is there a tool that performs automatic pathway mapping?

Thanks

Answer 1

[N15]

Look into the R package clusterProfiler:

https://yulab-smu.github.io/clusterProfiler-book/chapter6.html