What information does ChIA-PET2 tool trim statistics terms provide exactly?
0
0
Entering edit mode
4.5 years ago
bioinfo89 ▴ 60

Hi All,

I am analysing ChIA-PET data using ChIA-PET2 tool. I wanted to know what exactly the following terms mean from the trim statistics the tool provides:

Expect PETs
Expect both PETs
1Empty PETs
2Empty PETs
Valid PETs

What is the difference between Expected and Expected both PETs? And similarly what exactly does 1 Empty and 2 Empty mean? Is it related to absence of the linker sequences in the reads? Also, how does the tool detect which PETs are valid? None of the information is provided in the tool paper. Any help would be appreciated. Thanks!

ChIP-Seq • 699 views
ADD COMMENT

Login before adding your answer.

Traffic: 1647 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6