generate oncoprint from input VCF file

Question

[shu2010]

Hi, Are there any packages to visualise the variants as a oncoprint from input VCF files? More specifically, I have a joint called, VEP annotated VCF file or GVCF file from germline samples. I intend to convert the GVCF file into MAF format(for visualisation) using the VCF2MAF package and not sure if it is up for the task? Appreciate any help/suggestions !! Thanks Shu

[Thind amarinder]

Maybe one can try Vcf2maf https://github.com/mskcc/vcf2maf

[Shicheng Guo]

Any update to the problem?