Seurat FeaturePlot across stims
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4.5 years ago
V ▴ 410

Hello,

I have a very basic questions. I have a 'Seurat' file that I've analysed and is a merge of 8 different conditions. When plotting expression of a gene :

FeaturePlot(XSeurat.combined, features = 'Runx2', split.by = 'stim)

It shows me the expression of Runx2 across all conditions. Is there a way to modify the above so I can see only 1 or 2 conditions that I want?

Thank you.

seurat Seurat rstudio • 2.2k views
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Prior to FeaturePlot you can subset seurat object to include the required conditions.

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Thanks, did it using the below, leaving the code below as reference if anyone else runs into something similar. Would still be good to know if there is a way of doing it using a plotting function rather than having to subset things.

e14only <- subset(seurat.combined, subset = stim == c('X (e14)', 'Y (e14)'))
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