How to get all descendants of a GO-term OR how to identifiy if a GO-term is an ancestor of another?
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4.5 years ago
aquaq ▴ 40

Hi All,

I am using goatools in python and I was wondering if there are any easy ways, without iteratively looping through the tree, to determine all the descendants of a GO term. Alternatively, is there a way to determine whether a GO-term is a descendant (of any level) of another GO-term?

Thank you for your help!

goatools python go • 1.5k views
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Entering edit mode
4.5 years ago
aquaq ▴ 40

Finally I found: go_term.get_all_parents() would give me all parents with 'is a' relation, that is good enough for my purposes.

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