Question

How to check how variable a given DNA sequence is?

0

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4.5 years ago

roy.granit ▴ 890

I have a human DNA sequence and I wish to check how variable this sequence is.. is there a way to check how many SNPs are found at the given location?

Thanks!

SNP DNA • 612 views

ADD COMMENT • link updated 4.5 years ago by Pierre Lindenbaum 164k • written 4.5 years ago by roy.granit ▴ 890

score 2 · Accepted Answer · 2020-05-18

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4.5 years ago

Pierre Lindenbaum 164k

blat the sequence, extract the location, extract the variants in the vcf from dbsnp in that region.

ADD COMMENT • link 4.5 years ago by Pierre Lindenbaum 164k